PhyResSE

PhyResSE is a simple and reliable viewer for mycobacterial DNA reads. Any paired-end or single-end data stemming from Illumina or Ion Torrent Next Generation Sequencing of Mycobacterium tuberculosis will be analyzed. PhyResSE combines well-established methods from FastQC, BWA, QualiMap, SAMtools, and others with a treasure-trove of experimentally validated cases acquired at our institute. In-depth QC is applied to both reads and mapping performance before classifying your sample. Reports strain lineage and antibiotic resistance.

Important

Read type must be indicated with _R1 and _R2 (paired end) or _R0 (single end read) after sample name and before file extension
Allowed file extensions: .fastq, .gz or .fastq.gz
Example: sample1_R1.fastq.gz, sample1_R2.fastq.gz, sample-2_R0.fastq ..